Introduction to Neurohacking In R

Description

In this course, you will :

• Read/write images of the brain in the NIfTI (Neuroimaging Informatics Technology Initiative) format Visualize and explore these images Perform inhomogeneity correction, brain extraction, and image registration (within a subject and to a template).

Syllabus  :

1. Neuroimaging: Formats and Visualization

• Data Structures and Operations
• The NIfTI Format
• Basic Visualization 
• Basic Data Manipulation
• Transformations and Smoothing
• Basic MRI Contrasts

 

2. Image Processing

• Preprocessing: An Overview
• Registration
• fslr: System Requirements
• Bias Field Correction Using fslr
• Brain Extraction using fslr
• Image Registration Using fslr
• Installing ANTsR
• Basic Data Manipulation with ANTsR
• Pre-Processing with ANTSR

 

3. Extended Image Processing

• Advanced Brain Image Processing
• Co-Registration using fslr
• Co-Registration using ANTsR
• Wrapper Functions for Processing Pipelines
• Across-Visit Co-Registration of T1 Images
• Rigid Registration to a Template
• Affine Registration of T1 to Template
• Nonlinear Registration of T1 to Template
• Getting ROI Anatomic Information from Non-Linear Registration
• Tissue-Level Segmentation
• Papayar: Interactively Viewing Images in R

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